Development and validation of PCR-RFLP assay for identification of Gambierdiscus species in the Greater Caribbean region
| dc.contributor.advisor | Erdner, Deana L. | |
| dc.contributor.committeeMember | Villareal, Tracy A. | |
| dc.contributor.committeeMember | Baker, Brett | |
| dc.creator | Lozano-Duque, Yesid | |
| dc.creator.orcid | 0000-0003-2878-6079 | |
| dc.date.accessioned | 2016-09-26T18:00:15Z | |
| dc.date.available | 2016-09-26T18:00:15Z | |
| dc.date.issued | 2016-08 | |
| dc.date.submitted | August 2016 | |
| dc.date.updated | 2016-09-26T18:00:15Z | |
| dc.description.abstract | The genus Gambierdiscus is a recognized group of marine epiphytic-benthic dinoflagellates that produce the toxins that cause Ciguatera Fish Poisoning (CFP). To date, 12 species and 6 ribotypes of Gambierdiscus have been identified, and multiple species commonly co-occur within a single site or epiphyte community. Toxicity can vary by species, thus it is important to be able to differentiate between the species for research and monitoring purposes. Gambierdiscus species have very similar morphological characteristics and are very difficult or impossible to distinguish using light microscopy. DNA sequencing has been an important tool in the definition of the Gambierdiscus species, but it can be time-consuming and relatively expensive. To provide an alternative approach, I developed a PCR-RFLP protocol for efficient, rapid, and cost-effective identification of Gambierdiscus species in the Gulf of Mexico and Caribbean Sea, where CFP cases and Gambierdiscus spp. have been reported. The assay targets the D1-D2 hypervariable regions of the large subunit ribosomal RNA gene and uses a single restriction enzyme (BsrI). This method produces distinct RFLP banding patterns for the six species of Gambierdiscus reported from the Gulf of Mexico and Caribbean Sea, and it distinguishes them from the four Pacific endemic species. This method was successfully used to type 496 clonal isolates of Gambierdiscus from the U.S. Virgin Islands and expands the tools available to researchers and managers engaged in monitoring activities and ecological studies. | |
| dc.description.department | Marine Science | |
| dc.format.mimetype | application/pdf | |
| dc.identifier | doi:10.15781/T2KP7TS7H | |
| dc.identifier.uri | http://hdl.handle.net/2152/41206 | |
| dc.language.iso | en | |
| dc.subject | Benthic dinoflagellate | |
| dc.subject | Harmful algae | |
| dc.subject | D1-D2 LSU | |
| dc.subject | Bsr1 | |
| dc.subject | Restriction enzyme | |
| dc.subject | Species identification | |
| dc.title | Development and validation of PCR-RFLP assay for identification of Gambierdiscus species in the Greater Caribbean region | |
| dc.type | Thesis | |
| dc.type.material | text | |
| thesis.degree.department | Marine Science | |
| thesis.degree.discipline | Marine science | |
| thesis.degree.grantor | The University of Texas at Austin | |
| thesis.degree.level | Masters | |
| thesis.degree.name | Master of Science in Marine Science |