Browsing by Subject "Xiphophorus"
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Item Applying mathematical and statistical methods to the investigation of complex biological questions(2013-08) Scarpino, Samuel Vincent; Kirkpatrick, Mark, 1956-; Meyers, Lauren AncelThe research presented in this dissertation integrates data and theory to examine three important topics in biology. In the first chapter, I investigate genetic variation at two loci involved in a genetic incompatibility in the genus Xiphophorus. In this genus, hybrids develop a fatal melanoma due to the interaction of an oncogene and its repressor. Using the genetic variation data from each locus, I fit evolutionary models to test for coevolution between the oncogene and the repressor. The results of this study suggest that the evolutionary trajectory of a microsatellite element in the proximal promoter of the repressor locus is affected by the presence of the oncogene. This study significantly advances our understanding of how loci involved in both a genetic incompatibility and a genetically determined cancer evolve. Chapter two addresses the role polyploidy, or whole genome duplication, has played in generating flowering plant diversity. The question of whether polyploidy events facilitate diversification has received considerable attention among plant and evolutionary biologists. To address this question, I estimated the speciation and genome duplication rates for 60 genera of flowering plants. The results suggest that diploids, as opposed to polyploids, generate more species diversity. This study represents the broadest comparative analysis to date of the effect of polyploidy on flowering plant diversity. In the final chapter, I develop a computational method for designing disease surveillance networks. The method is a data-driven, geographic optimization of surveillance sites. Networks constructed using this method are predicted to significantly outperform existing networks, in terms of information quality, efficiency, and robustness. This work involved the coordinated efforts of researchers in biology, epidemiology, and operations research with public health decision makers. Together, the results of this dissertation demonstrate the utility of applying quantitative theory and statistical methods to data in order to address complex, biological processes.Item Investigating the female mate preference brain : identifying molecular mechanisms underlying variation in mate preference in specific regions of a swordtail (Xiphophorus nigrensis) brain(2011-05) Wong, Ryan Ying; Hofmann, Hans (Hans A.); Cummings, Molly E.; Ryan, Michael J.; Crews, David; Zakon, HaroldChoosing with whom to mate is one of the most important decisions a female makes in her lifetime and inter-individual variation of these preferences can have important evolutionary consequences. In order to get a complete understanding of why and how females choose a mate, we must identify factors that can contribute to variation of female mate choice. Many decades of research sought to understand ultimate mechanisms of female mate choice with proximate mechanisms receiving a lot more attention in recent years. For my thesis, I identify intrinsic and extrinsic factors that correlate with individual variation of female Xiphophorus nigrensis mate preference. I provide evidence that a female’s size (e.g. age and sexual experience) as well as male behavioral displays can predict female mate preference. Using genes associated with female mate preference (neuroserpin, neurologin-3), I identify four brain regions (Dl, Dm, HV, POA) that show significant differences in gene expression between females exhibiting high preference for males relative to females displaying little mate preference. Neuroserpin and neuroligin-3 gene expression within these brain regions are also positively correlated with female mate preference behavior. Two of these brain regions (Dm and Dl) integrate multisensory information and are found in the putative teleost mesolimbic reward circuitry; the other two regions (HV and POA) are involved in sexual behaviors. With the implication of the reward circuitry, I assess whether there are changes in dopamine synthesis (via tyrosine hydroxylase, TH) in dopaminergic brain regions associated with the degree of mate preference. I do not find evidence of rapid changes (within 30 minutes) of TH expression (i.e. dopamine synthesis) in dopaminergic brain regions related to variation in female mate preference. Collectively my results suggest that mate preference behavior in the brain may be coordinated not just through regions associated with sexual response but also through forebrain areas that may integrate primary sensory information, with no associated changes of a proxy for dopamine synthesis in dopaminergic brain regions.Item Localizing Brain Regions Associated with Female Mate Preference Behavior in a Swordtail(Public Library of Science, 2012-11-29) Wong, Ryan Y.; Ramsey, Mary E.; Cummings, Molly E.Female mate choice behavior is a critical component of sexual selection, yet identifying the neural basis of this behavior is largely unresolved. Previous studies have implicated sensory processing and hypothalamic brain regions during female mate choice and there is a conserved network of brain regions (Social Behavior Network, SBN) that underlies sexual behaviors. However, we are only beginning to understand the role this network has in pre-copulatory female mate choice. Using in situ hybridization, we identify brain regions associated with mate preference in female Xiphophorus nigrensis, a swordtail species with a female choice mating system. We measure gene expression in 10 brain regions (linked to sexual behavior, reward, sensory integration or other processes) and find significant correlations between female preference behavior and gene expression in two telencephalic areas associated with reward, learning and multi-sensory processing (medial and lateral zones of the dorsal telencephalon) as well as an SBN region traditionally associated with sexual response (preoptic area). Network analysis shows that these brain regions may also be important in mate preference and that correlated patterns of neuroserpin expression between regions co-vary with differential compositions of the mate choice environment. Our results expand the emerging network for female preference from one that focused on sensory processing and midbrain sexual response centers to a more complex coordination involving forebrain areas that integrate primary sensory processing and reward.Item Sperm competition and the evolution of alternative reproductive tactics in the swordtail Xiphophorus nigrensis (Poeciliidae)(2011-05) Smith, Chad Christopher; Ryan, Michael J. (Michael Joseph), 1953-; Mueller, Ulrich; Juenger, Tom; Bolnick, Daniel; Rosenthal, GilDarwin identified sexual selection as an important evolutionary process resulting from differences among males in their ability to secure mates. In the latter half of the 20th century, it became apparent that females often mate with multiple partners within the same reproductive cycle, leading to the overlap of ejaculates from multiple males and sperm competition for the fertilization of the eggs. Here, I examine how sperm competition has influenced the evolution of Xiphophorus nigrensis, an internally fertilized, livebearing fish with alternative male mating tactics that are dependent upon male size. I find that variation in male tactic is correlated with variation in traits relevant to sperm competition: small males that sneak copulations produce ejaculates with a greater proportion of fertilization-capable sperm (sperm viability) and sperm that is longer-lived following activation compared to large males that court females. Sperm morphology is also divergent between tactics and correlated with sperm performance: smaller males have larger midpieces and midpiece size is positively correlated with sperm velocity and longevity. Social environment also affects ejaculate quality, with sperm velocity rapidly increasing when a small male is exposed to another small male compared to when he is exposed to a large male. Large male ejaculates were invariant across social environments. Next, I demonstrate experimentally that the observed variation in sperm quality has important consequences for the outcome of sperm competition. Males with superior sperm viability sire more offspring, while sperm velocity is negatively associated with sperm competitive ability when sperm are stored within the female prior to fertilization. Finally, I show that sperm competition is likely to have important effects on male reproductive success in the wild by characterizing the genetic mating system of X. nigrensis. I find that 61% of females collected from the Nacimiento Río Choy produce offspring sired by 2-4 males. Paternity is strongly skewed among sires, with an average of 70% of offspring sired by one of the males represented in the brood. These studies illustrate sperm competition can have potent effects on the evolution of animals.