Browsing by Subject "Optical spectroscopy"
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Item Estimation of in-situ fluid properties from the combined interpretation of nuclear, dielectric, optical, and magnetic resonance measurements(2018-12) Lee, Hyungjoo; Torres-Verdín, Carlos; Daigle, Hugh; Heidari, Zoya; Okuno, Ryosuke; Raizen, MarkDuring the last few decades, the quantification of hydrocarbon pore volume from borehole measurements has been widely studied for reservoir descriptions. Relatively less effort has been devoted to estimating in-situ fluid properties because (1) acquiring fluid samples is expensive, (2) reservoir fluids are a complex mixture of various miscible and non-miscible phases, and (3) they depend on environmental factors such as temperature and pressure. This dissertation investigates the properties of fluid mixtures based on various manifestations of their electromagnetic properties from the MHz to the THz frequency ranges. A variety of fluids, including water, alcohol, alkane, aromatics, cyclics, ether, and their mixtures, are analyzed with both laboratory experiments and numerical simulations. A new method is introduced to quantify in-situ hydrocarbon properties from borehole nuclear measurements. The inversion-based estimation method allows depth-continuous assessment of compositional gradients at in-situ conditions and provides thermodynamically consistent interpretations of reservoir fluids that depend greatly on phase behavior. Applications of this interpretation method to measurements acquired in two field examples, including one in a gas-oil transition zone, yielded reliable and verifiable hydrocarbon compositions. Dielectric properties of polar liquid mixtures were analyzed in the frequency range from 20 MHz to 20 GHz at ambient conditions. The Havriliak-Negami (HN) model was adapted for the estimation of dielectric permittivity and relaxation time. These experimental dielectric properties were compared to Molecular Dynamics (MD) simulations. Additionally, thermodynamic properties, including excess enthalpy, density, number of hydrogen bonds, and effective self-diffusion coefficient, were computed to cross-validate experimental results. Properties predicted from MD simulations are in excellent agreement with experimental measurements. The three most common optical spectroscopy techniques, i.e. Near Infrared (NIR), Infrared, and Raman, were applied for the estimation of compositions and physical properties of liquid mixtures. Several analytical techniques, including Principal Component Analysis (PCA), Radial Basis Functions (RBF), Partial Least-Squares Regression (PLSR), and Artificial Neural Networks (ANN), were separately implemented for each spectrum to build correlations between spectral data and properties of liquid mixtures. Results show that the proposed methods yield prediction errors from 1.5% to 22.2% smaller than those obtained with standard multivariate methods. Furthermore, the errors can be decreased by combining NIR, Infrared, and Raman spectroscopy measurements. Lastly, the ¹H NMR longitudinal relaxation properties of various liquid mixtures were examined with the objective of detecting individual components. Relaxation times and diffusion coefficients obtained via MD simulations for these mixtures are in agreement with experimental data. Also, the ¹H-¹H dipole-dipole relaxations for fluid mixtures were decomposed into the relaxations emanate from the intramolecular and intermolecular interactions. The quantification of intermolecular interactions between the same molecules and different molecules reveals how much each component contributes to the total NMR longitudinal relaxation of the mixture as well as the level of interactions between different fluids. Both experimental and numerical simulation results documented in this dissertation indicate that selecting measurement techniques that can capture the physical property of interest and maximize the physical contrasts between different components is important for reliable and accurate in-situ fluid identificationItem Nanoscale characterization of interactions between molecular specific plasmonic nanoparticles and living cells and its implications for optical imaging of protein-protein interactions(2009-12) Harrison, Nathan Daniel; Sokolov, Konstantin V. (Associate professor); Keto, John; Fink, Manfred; Florin, Ernst-Ludwig; Richards-Kortum, RebeccaImaging of biomolecules on the nano-scale is a crucial developing technology with major implications for our understanding of biological systems and for detection and therapy of disease. Plasmonic nanoparticles are a key optical contrast agent whose signal is generated by the collective oscillation of electrons in the metal particle. The resonance behavior of the electrons depends strongly on the arrangement of neighboring nanoparticles in a structure. This property may be exploited in imaging applications to report information on nanoscale morphology of targeted biomolecules. While the effect of plasmon resonance coupling has been studied in dimers and linear arrays of nanoparticles, this phenomenon remains largely unexplored in the case of 2D and 3D assemblies which are important in molecular cell imaging. This dissertation demonstrates how the optical signal from assemblies of gold nanoparticles can be related to nanoscale morphology in cellular imaging systems. First, the scattering spectra from live cells labeled with gold nanoparticles were collected and compared to the nanoscale arrangement of the particles in the same cells as determined by electron micrograph. Then, trends in scattering spectra with respect to nanoparticle arrangement were analyzed using a model system that allowed precise control over arrangement of nanoparticles. Several approaches to creating these model systems are discussed including biochemical linking, capillary assembly of colloidal particles, and direct deposition of gold onto substrates patterned by electron beam lithography. Spectral properties of the assemblies including peak position, width, and intensity are gathered and related to model variables including interparticle gap and overall particle number. It is shown that the redshift in the scattering spectra from nanoparticle assemblies is derived from both the particle number and the gap and is due to near-field coupling of particles as well as phase retardation of the scattered wave. The redshift behavior saturates as the number of particles in the aggregate increases but the saturation point depends strongly on interparticle gap. The drastic dependence of the red-shift saturation on the gap between nanoparticles has not been previously described; this phenomenon can have significant impact on the development of nanoparticle contrast agents and plasmonic sensor arrays.Item Optical reflectance spectroscopy for cancer diagnosis : analysis and modeling(2010-12) Kan, Chih-Wen; Sokolov, Konstantin V. (Associate professor); Markey, Mia Kathleen; Bovik, Alan C.; Dunn, Andrew K.; Nieman, Linda T.This dissertation focuses on the development of algorithms for analyzing and modeling of the signals from optical spectroscopy. This dissertation is motivated by the detection of oral cancer, but some of the methods developed can be generalized to epithelial cancers of other sites. Two main topics are covered in this dissertation: Analysis and Modeling. For analysis, the focus is on developing algorithms to make diagnostic predictions. The analysis methods are empirically tested using an oral cancer dataset. Statistical analyses show that polarized reflectance spectroscopy has the potential to aid screening and diagnosis of oral cancer. Also, a novel adaptive windowing technique is developed to extract spectral features with fewer windows that retain the diagnostic information. For modeling, a Monte Carlo model simulating light-tissue interactions is presented to aid in the design of diagnostic instrumentation.Item Optical spectroscopy study of silicon nanocrystals(2012-08) Wei, Junwei; Downer, Michael Coffin; Sitz, Greg O.; Li, Xiaoqin; Demkov, Alex; Ekerdt, John G.Silicon nanocrystals (NCs), especially Si NCs embedded in SiO₂, have been studied intensely for decades for their potential application in silicon photonics, especially as efficient room temperature light emitters. Despite progress in fabricating photonic devices from Si NCs, the origin of the efficient photoluminescence (PL), the electronic and microscopic structure of the nanocrystals, and the structure of the elusive NC/SiO₂ interfaces for the oxide-embedded nanocrystals, remain controversial. Optical spectroscopy provides a powerful noninvasive tool for probing the structure of the Si NCs, including the active buried NC/SiO₂ interfaces of embedded particles. In this thesis work, oxide-embedded and free-standing alkyl-passivated silicon nanocrystals, prepared by different techniques, have been studied by linear and nonlinear optical spectroscopies. Cross-polarized 2-beam second-harmonic and sum-frequency generation (XP2-SHG/SFG) has been applied spectroscopically to study oxide embedded Si NCs of different sizes (3 to 5 nm diameter) and interface chemistries. The SHG/SFG spectra of silicon nanocrystals (Si NCs) prepared by implanting Si ions uniformly into silica substrates, then annealing, are compared and contrasted to their spectroscopic ellipsometric (SE) and photoluminescence excitation (PLE) spectra. Three resonances--two close in energy to E₁ (3.4 eV) and E2 (4.27 eV) critical-point resonances of crystalline silicon (c-Si), and a broad resonance intermediate in energy between E₁ and E₂--are observed in all three types of spectra. These features are observed in conjunction with a sharp 520 cm⁻¹ Raman peak characteristic of c-Si and an a-Si tail in the Raman spectra. The appearance of bulk-like CP resonances in the parallel PLE, SE and SHG/SFG spectra from Si NCs suggests the basic electronic structure of the bulk c-Si is preserved in nano-particles as small as 3 nm in diameter, albeit with significant size-dependent modification. At the same time, the prominence of a non-bulk-like resonance intermediate in energy between E₁ and E₂ CPs in all three types of spectra demonstrates the important contribution of nano-interfaces to the electronic structure.We also applied Raman spectroscopy to study oxide-embedded and oxide-free alkyl-passivated Si NCs with diameters ranging from 3 nm to greater than 10 nm synthesized by thermal decomposition of hydrogen silsesquioxane (HSQ). While oxide matrix complicates the size-dependence of the Raman peak shift for oxide-embedded nanocrystals, the Raman peak of the free-standing alkyl-passivated Si NCs shifts monotonically with NC size.Item Spectral diagnosis of skin cancer(2010-05) Rajaram, Narasimhan; Tunnell, James W.; Reichenberg, Jason S.; Nguyen, Tri H.; Dunn, Andrew K.; Milner, Thomas E.; Sokolov, Konstantin V.The number of skin cancer cases reported in the United States is increasing every year and nearly equals the total cancer cases detected from every other part of the body. Current detection strategies of skin cancers include a visual examination followed by a tissue biopsy. This procedure is subjective, invasive and time-consuming. Therefore, considering the number of cancer cases reported and the number biopsies performed, there is a critical need for a non-invasive diagnostic aid to help clinicians reduce the significantly large numbers of unnecessary biopsies. This dissertation presents a quantitative method based on optical spectroscopy for performing a non-invasive ‘optical biopsy’ of melanoma and non-melanoma skin cancers. We have developed the hardware, software and optical algorithms necessary to implement such a device. First, we present a novel lookup table-based model for determining the optical properties of tissue that is valid for fiber-based probe geometries with close source-detector separations and in highly absorbing tissue. These optical properties are quantitative parameters that can be correlated with the physiology of tissue. Second, we present experimental validation of the effects of microvasculature pigment packaging on diffuse reflectance spectra. We have conducted experiments using microfluidic devices over a physiologically relevant range of optical properties and blood vessel sizes. Third, we present the development of a probe-based portable and clinically compatible instrument capable of in vivo spectral measurements. The instrument combines two modalities – diffuse reflectance and intrinsic fluorescence spectroscopy – to provide complementary information regarding tissue morphology, function and biochemical composition. Finally, we present the results of a pilot clinical study using our portable instrument to determine the accuracy of spectral diagnosis of non-melanoma skin cancers. Our results show that the mean optical properties and fluorophore contributions of normal skin and non-melanoma skin cancers are significantly different from each other and can potentially be used as biomarkers for non-invasive diagnosis of skin cancer.