• Automation of Determination of Optimal Intra-Compute Node Parallelism 

      Gómez-Iglesias, Antonio; Brown, James C. (2016)
      Maximizing the productivity of modern multicore and manycore chips requires optimizing parallelism at the compute node level. This is, however, a complex multi-step process. It is an iterative method requiring determining ...
    • Benchmarking the Intel®Xeon®Platinum 8160 Processor 

      Gómez-Iglesias, Antonio; Chen, Feng; Huang, Lei; Liu, Hang; Liu, Si; Rosales, Carlos (2017-08-10)
    • Complete Plastome Sequence of Thalictrum Coreanum (Ranunculaceae) and Transfer of the rpl32 Gene to the Nucleus in the Ancestor of the Subfamily Thalictroideae 

      Park, Seongjun; Jansen, Robert K.; Park, SeonJoo (2015-02)
      Plastids originated from cyanobacteria and the majority of the ancestral genes were lost or functionally transferred to the nucleus after endosymbiosis. Comparative genomic investigations have shown that gene transfer from ...
    • A DSL for Integrative Parallel Programming 

      Eijkhout, Victor (2014)
    • Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs 

      Kundeti, Vamsi K.; Rajasekaran, Sanguthevar; Dinh, Hieu; Vaughn, Matthew; Thapar, Vishal (BMC Bioinformatics, 2010-11-15)
      Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly problem fall into two broad categories - based ...
    • The Eighth Data Release of the Sloan DIGITal Sky Survey: First Data from SDSS-III 

      Aihara, Hiroaki; Allende Prieto, Carlos; An, Deokkeun; Anderson, Scott F.; Aubourg, Eric; Balbinot, Eduardo; Beers, Timothy C.; Berlind, Andreas A.; Bickerton, Steven J.; Bizyaev, Dmitry; Blanton, Michael R.; Bochanski, John J.; Bolton, Adam S.; Bovy, Jo; Brandt, W. N.; Brinkmann, J.; Brown, Peter J.; Brownstein, Joel R.; Busca, Nicolas G.; Campbell, Heather; Carr, Michael A.; Chen, Yanmei; Chiappini, Cristina; Comparat, Johan; Connolly, Natalia; Cortes, Marina; Croft, Rupert A. C.; Cuesta, Antonio J.; da Costa, Luiz N.; Davenport, James R. A.; Dawson, Kyle; Dhital, Saurav; Ealet, Anne; Ebelke, Garrett L.; Edmondson, Edward M.; Eisenstein, Daniel J.; Escoffier, Stephanie; Esposito, Massimiliano; Evans, Michael L.; Fan, Xiaohui; Femenia Castella, Bruno; Font-Ribera, Andreu; Frinchaboy, Peter M.; Ge, Jian; Gillespie, Bruce A.; Gilmore, G.; Gonzalez Hernandez, Jonay I.; Gott, J. Richard; Gould, Andrew; Grebel, Eva K.; Gunn, James E.; Hamilton, Jean-Christophe; Harding, Paul; Harris, David W.; Hawley, Suzanne L.; Hearty, Frederick R.; Ho, Shirley; Hogg, David W.; Holtzman, Jon A.; Honscheid, Klaus; Inada, Naohisa; Ivans, Inese I.; Jiang, Linhua; Johnson, Jennifer A.; Jordan, Cathy; Jordan, Wendell P.; Kazin, Eyal A.; Kirkby, David; Klaene, Mark A.; Knapp, G. R.; Kneib, Jean-Paul; Kochanek, C. S.; Koesterke, Lars; Kollmeier, Juna A.; Kron, Richard G.; Lampeitl, Hubert; Lang, Dustin; Le Goff, Jean-Marc; Lee, Young Sun; Lin, Yen-Ting; Long, Daniel C.; Loomis, Craig P.; Lucatello, Sara; Lundgren, Britt; Lupton, Robert H.; Ma, Zhibo; MacDonald, Nicholas; Mahadevan, Suvrath; Maia, Marcio A. G.; Makler, Martin; Malanushenko, Elena; Malanushenko, Viktor; Mandelbaum, Rachel; Maraston, Claudia; Margala, Daniel; Masters, Karen L.; McBride, Cameron K.; McGehee, Peregrine M.; McGreer, Ian D.; Menard, Brice; Miralda-Escude, Jordi; Morrison, Heather L.; Mullally, F.; Muna, Demitri; Munn, Jeffrey A.; Murayama, Hitoshi; Myers, Adam D.; Naugle, Tracy; Neto, Angelo Fausti; Duy Cuong, Nguyen; Nichol, Robert C.; O'Connell, Robert W.; Ogando, Ricardo L. C.; Olmstead, Matthew D.; Oravetz, Daniel J.; Padmanabhan, Nikhil; Palanque-Delabrouille, Nathalie; Pan, Kaike; Pandey, Parul; Paris, Isabelle; Percival, Will J.; Petitjean, Patrick; Pfaffenberger, Robert; Pforr, Janine; Phleps, Stefanie; Pichon, Christophe; Pieri, Matthew M.; Prada, Francisco; Price-Whelan, Adrian M.; Raddick, M. Jordan; Ramos, Beatriz H. F.; Reyle, Celine; Rich, James; Richards, Gordon T.; Rix, Hans-Walter; Robin, Annie C.; Rocha-Pinto, Helio J.; Rockosi, Constance M.; Roe, Natalie A.; Rollinde, Emmanuel; Ross, Ashley J.; Ross, Nicholas P.; Rossetto, Bruno M.; Sanchez, Ariel G.; Sayres, Conor; Schlegel, David J.; Schlesinger, Katharine J.; Schmidt, Sarah J.; Schneider, Donald P.; Sheldon, Erin; Shu, Yiping; Simmerer, Jennifer; Simmons, Audrey E.; Sivarani, Thirupathi; Snedden, Stephanie A.; Sobeck, Jennifer S.; Steinmetz, Matthias; Strauss, Michael A.; Szalay, Alexander S.; Tanaka, Masayuki; Thakar, Aniruddha R.; Thomas, Daniel; Tinker, Jeremy L.; Tofflemire, Benjamin M.; Tojeiro, Rita; Tremonti, Christy A.; Vandenberg, Jan; Magana, M. Vargas; Verde, Licia; Vogt, Nicole P.; Wake, David A.; Wang, Ji; Weaver, Benjamin A.; Weinberg, David H.; White, Martin; White, Simon D. M.; Yanny, Brian; Yasuda, Naoki; Yeche, Christophe; Zehavi, Idit (2011-04)
      The Sloan Digital Sky Survey (SDSS) started a new phase in 2008 August, with new instrumentation and new surveys focused on Galactic structure and chemical evolution, measurements of the baryon oscillation feature in the ...
    • Heritable Epigenetic Variation among Maize Inbreds 

      Eichten, Steve R.; Swanson-Wagner, Ruth A.; Schnable, James C.; Waters, Amanda J.; Hermanson, Peter J.; Liu, Sanzhen; Yeh, Cheng-Ting; Jia, Yi; Gendler, Karla; Freeling, Michael; Schnable, Patrick S.; Vaughn, Matthew W.; Springer, Nathan M. (Public Library of Science, 2011-11-17)
      Epigenetic variation describes heritable differences that are not attributable to changes in DNA sequence. There is the potential for pure epigenetic variation that occurs in the absence of any genetic change or for more ...
    • Quantitative Spectroscopy In 3D 

      Koesterke, L. (2009-09)
      The Advanced Spectrum Synthesis 3D Tool ASSET is introduced. ASSET allows for the accurate and fast calculation of spectra from 3D hydrodynamical models. To achieve the highest numerical accuracy 3(rd)-order Bezier ...
    • Spreading of Heterochromatin Is Limited to Specific Families of Maize Retrotransposons 

      Eichten, Steven R.; Ellis, Nathanael A.; Makarevitch, Irina; Yeh, Cheng-Ting; Gent, Jonathan I.; Guo, Lin; McGinnis, Karen M.; Zhang, Xiaoyu; Schnable, Patrick S.; Vaughn, Matthew W.; Dawe, R. Kelly; Springer, Nathan M. (Public Library of Science, 2012-12-13)
      Transposable elements (TEs) have the potential to act as controlling elements to influence the expression of genes and are often subject to heterochromatic silencing. The current paradigm suggests that heterochromatic ...
    • Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems 

      Shang, Lei; Gardner, David P.; Xu, Weija; Cannone, Jamie J.; Miranker, Daniel P.; Ozer, Stuart; Gutell , Robin R. (BMC Systems Biology, 2013-10-23)
      Background: The analysis of RNA sequences, once a small niche field for a small collection of scientists whose primary emphasis was the structure and function of a few RNA molecules, has grown most significantly with the ...
    • Understanding the Software Needs of High Performance Computer Users with XALT 

      McLay, Robert; Fahey, Mark (Texas Advanced Computing Center, 2015)
      The dataset is produced by the software XALT, which tracks executables and libraries installed on the High Performance Computing (HPC) resource Stampede (https://www.tacc.utexas.edu/stampede/) at the Texas Advanced Computing ...
    • User Guided Design: Building Confidence in Engineering Data Publication 

      Sweat, Sandra; Ranganath, Aditi; Esteva, Maria; Prodanović, Maša (2016-09-12)