Browsing by Subject "Fractionation"

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Depositional and diagenetic processes in the formation of the Eocene Jackson Group bentonites, Gonzales County, Texas
(2011-12) Michaelides, Michael Nicholas; Kyle, J. Richard; Gardner, James; Heister, Lara; Serenko, Thomas
Bentonite clays are exposed in Paleogene strata stretching over 650 km parallel to the Texas coastline. This study focuses on a white and blue and a yellow and brown commercial Ca-montmorillonite bentonite near the city of Gonzales, Gonzales county, Texas. The deposits have stratigraphic ages of Late Eocene (~36.7 - 32.7 Ma). The bentonites in these deposits have varying colors, purities and brightness affording them diverse industrial uses. The distribution and geologic character of the high purity white and blue bentonite suggests that the deposit represents an accumulation of volcanic ash in a secondary tidal channel during the ash-fall event. A low rate of terrigenous clastic sedimentation and rapid accumulation of fresh ash were critical to the formation of high purity clay. The lower purity yellow and brown bentonites appear to have a fluvial origin marked by higher rates of detrital sedimentation and episodic accumulation of clay and ash. The bentonite and associated strata were studied using optical microscopy, SEM, XRD and REE analyses to constrain their textural, mineralogic, and chemical character. vii Eocene pyroclastic volcanism is well documented from sources in southwestern North America, specifically in the Sierra Madre Occidental (Mexico), Trans-Pecos (Texas) and Mogollan-Datil (New Mexico) volcanic fields. Projected Eocene wind patterns support this region as a potential source for the Gonzales bentonites. A comparison of the trace and REE fingerprints of the white and blue bentonites and the yellow and brown bentonites with data available for Late Eocene volcanics in the North American Volcanic Database provides a couple of potential matches. The strongest potential match for the Late Eocene bentonite protolith is described as a sample of silicic tuff with an age range of 32.2 – 30.6 Ma, located in the southern Mexican state of Oaxaca. While the trace and REE match is strong, the tuff is somewhat young compared to the Jackson Group sediments. In addition, the sample location is due almost directly south of the Gonzales deposits, rather than the western location expected for a Gonzales bentonite source. The other potential matches are located in New Mexico, and the Mexican state of Chihuahua. These potential matches only have 6 REE available for comparison, and require further investigation. Many Paleogene volcanic units in southern North America are undocumented with regard to REE data or precise absolute ages. As additional geochemical analyses become available for a more extensive suite of Paleogene volcanic units, stronger matches with Gulf of Mexico Basin bentonites are expected to emerge.
Isolation and characterization of Pisum sativum apyrases, PsNTP9 and PsNTP9-DM, cloned and expressed in Escherichia coli
(2019-02-06) Wallen, Michael Andrew, Jr; Roux, Stanley J.
Adenosine triphosphate (ATP) is widely known as a fuel source for many biochemical processes, and to a lesser degree also as a signaling molecule in plants and animals. When plants are subjected to biotic or abiotic stress or undergoing exocytosis, they release ATP into the extracellular matrix (ECM). The release of ATP sets off a signal transduction pathway, first rapidly increasing the concentrations of cytosolic calcium, reactive oxygen species, and nitric oxide. How these changes specifically influence physiology is the object of much research in both plants and animals. Some of the changes that are affected influence growth and development, stomatal function, and gravitropism. Apyrases and other phosphatases control the concentration of the released nucleotides by breaking phosphate bonds from nucleoside triphosphates and diphosphates. Research aimed at the discovery of receptors, signaling pathway components, and processes has been successful to some extent. There are now known purinergic receptors in both plants and animal cells. We have cloned a truncated version of Pisum sativum (ps) NTP9. We used a pET-22B vector to add a histidine tag and transformed the vector into the BL21 Escherichia coli with a T7 promoter to enable IPTG induction of the LAC operon and expression of the enzyme. The pET-22B vector was incubated in separate samples with BL21 cells. Cells were propagated, and the expression of recombinant proteins PsNTP9, and separately, a double mutant PsNTP9-DM with a second calmodulin-binding domain, were induced ectopically. Cells were broken open by shaking them and mixing them with lysis buffer. Centrifugation was performed to separate the supernatant containing the released apyrases from the particulate wall fraction. The enzymes were purified by affinity chromatography, then their purity was evaluated by sodium dodecyl sulfate - polyacrylamide gel electrophoresis (SDS-PAGE). Western blots were performed to verify presence of the apyrases using a commercial anti-histidine antibody to detect PsNTP9 and PsNTP9-DM. Once suitable amounts of our proteins of interest were harvested, we performed Bradford assays to determine the protein concentration of the samples and carried out an apyrase activity assay to determine the specific activity of the purified enzymes and compare it to that of other known phosphatases.
Ultra-precise manipulation and assembly of nanoparticles using three fundamental optical forces
(2012-12) Demergis, Vassili; Florin, Ernst-Ludwig; Shubeita, George T; Fink, Manfred; Makarov, Dmitrii E; Korgel, Brian A
The invention of the laser in 1960 opened the door for a myriad of studies on the interactions between light and matter. Eventually it was shown that highly focused laser beams could be used to con fine and manipulate matter in a controlled way, and these instruments were known as optical traps. However, challenges remain as there is a delicate balance between object size, precision of control, laser power, and temperature that must be satisfied. In Part I of this dissertation, I describe the development of two optical trapping instruments which substantially extend the allowed parameter ranges. Both instruments utilize a standing wave optical field to generate strong optical gradient forces while minimizing the optical scattering forces, thus dramatically improving trapping efficiency. One instrument uses a cylinder lens to extend the trapping region into a line focus, rather than a point focus, thereby confining objects to 1D motion. By translation of the cylinder lens, lateral scattering forces can be generated to transport objects along the 1D trapping volume, and these scattering forces can be controlled independently of the optical gradient forces. The second instrument uses a collimated beam to generate wide, planar trapping regions which can con fine nanoparticles to 2D motion. In Part II, I use these instruments to provide the first quantitative measurements of the optical binding interaction between nanoparticles. I show that the optical binding force can be over 20 times stronger than the optical gradient force generated in typical optical traps, and I map out the 2D optical binding energy landscape between a pair of gold nanoparticles. I show how this ultra-strong optical binding leads to the self-assembly of multiple nanoparticles into larger contactless clusters of well de ned geometry. I nally show that these clusters have a geometry dependent coupling to the external optical field.